PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0162s00120.1
Common NameLR48_Vigan11g040600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 336aa    MW: 36540.5 Da    PI: 8.0393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0162s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-204999256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++ GVr+++ +grWvAeI+d s   ++ r +lg+++t+eeAa+a+++a+++l+ge
  Vang0162s00120.1 49 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 99
                      578******.7*********42...35**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.21E-3049106No hitNo description
PROSITE profilePS5103220.36349106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2849106IPR001471AP2/ERF domain
PfamPF008476.3E-154999IPR001471AP2/ERF domain
SMARTSM003803.9E-3449112IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2050106IPR016177DNA-binding domain
PRINTSPR003673.6E-75061IPR001471AP2/ERF domain
PRINTSPR003673.6E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MCRESNLQVQ EAHIIRAEAT KYGSTTSPTT TATTNMATRS SKPATMIRRF IGVRQRPSGR  60
WVAEIKDSSQ HVRLWLGTYD TPEEAARAYD EAARALRGEN ARTNFAPMNQ ATGQSGSNLL  120
TGDGKHGLSF ASLKAKLSKN LQNIMARASD HNKSSKSRVS DHFTFASIFH RRSYQIPEGD  180
MRNIEKVVQP SIIVPPVEGA VDYASAANWE SASTVSDCSS EWVGFGKLGL DQSDGSDIGE  240
FSVGDQGFLE QLMGWVESPD VTDQSECSRS KRFKVSSSVL VPPTFTASPY DCGSPYSGYA  300
SPYNGYFSPY NGYASPYNGC ASPCNGCVSP YYNKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522489.10.0PREDICTED: dehydration-responsive element-binding protein 2E-like
TrEMBLA0A0L9VQY50.0A0A0L9VQY5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SY030.0A0A0S3SY03_PHAAN; Uncharacterized protein
STRINGGLYMA07G08542.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-16related to AP2 11
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]